scanpy — Easy Playground

Single-cell RNA-seq analysis: preprocessing, clustering, visualization

Getting started with scanpyRun locally

Install

pip install scanpy

Python CodeRun locally

# Install: pip install scanpy
import scanpy

# Basic scanpy usage
print(f"Using scanpy")
# See documentation for detailed examples

# Install: pip install scanpy
import scanpy

# Basic scanpy usage
print(f"Using scanpy")
# See documentation for detailed examples

Expected Output

# Expected output shown below
# (Run locally with: scanpy)

scanpy is a third-party package. Single-cell RNA-seq analysis: preprocessing, clustering, visualization. Install with: pip install scanpy

Try modifying the code above to explore different behaviors. Can you extend the example to handle a new use case?