scanpy

Package — BioinformaticsPython 3.7+Expert

Single-cell RNA-seq analysis: preprocessing, clustering, visualization

Quick Info

Documentation: Official Docs
Python Version: 3.7+
Dependencies: NumPy, SciPy, pandas, matplotlib, anndata, h5py, scikit-learn, tqdm, packaging, natsort, networkx, seaborn
Install: pip install scanpy

python

# Install: pip install scanpy
import scanpy

# Basic scanpy usage
print(f"Using scanpy")
# See documentation for detailed examples

scanpy is a third-party package. Single-cell RNA-seq analysis: preprocessing, clustering, visualization. Install with: pip install scanpy