snakemake — Easy Playground

Workflow management for reproducible bioinformatics pipelines

Getting started with snakemakeRun locally

Install

pip install snakemake

Python CodeRun locally

# Install: pip install snakemake
import snakemake

# Basic snakemake usage
print(f"Using snakemake")
# See documentation for detailed examples

# Install: pip install snakemake
import snakemake

# Basic snakemake usage
print(f"Using snakemake")
# See documentation for detailed examples

Expected Output

# Expected output shown below
# (Run locally with: snakemake)

snakemake is a third-party package. Workflow management for reproducible bioinformatics pipelines. Install with: pip install snakemake

Try modifying the code above to explore different behaviors. Can you extend the example to handle a new use case?