snakemake

Package — BioinformaticsPython 3.7+Expert

Workflow management for reproducible bioinformatics pipelines

Quick Info

Documentation: Official Docs
Python Version: 3.7+
Dependencies: appdirs, configargparse, connection-pool, datrie, docutils, gitpython, humanfriendly, jinja2, jsonschema, nbformat, psutil, pulp, PyYAML, requests, retry, smart-open, stopit, tabulate, throttler, toposort, wrapt, yte
Install: pip install snakemake

python

# Install: pip install snakemake
import snakemake

# Basic snakemake usage
print(f"Using snakemake")
# See documentation for detailed examples

snakemake is a third-party package. Workflow management for reproducible bioinformatics pipelines. Install with: pip install snakemake