pysam — Easy Playground

Read and manipulate SAM/BAM/CRAM alignment files

Getting started with pysamRun locally

Install

pip install pysam

Python CodeRun locally

# Install: pip install pysam
import pysam

# Basic pysam usage
print(f"Using pysam")
# See documentation for detailed examples

# Install: pip install pysam
import pysam

# Basic pysam usage
print(f"Using pysam")
# See documentation for detailed examples

Expected Output

# Expected output shown below
# (Run locally with: pysam)

pysam is a third-party package. Read and manipulate SAM/BAM/CRAM alignment files. Install with: pip install pysam

Try modifying the code above to explore different behaviors. Can you extend the example to handle a new use case?